Course ID: | PBIO(PATH) 8250. 3 hours. |
Course Title: | Experimental Design and Analysis in Field Plant Biology |
Course Description: | Students will learn how to design effective, informed, experimental, and observational studies for field plant biology. The course will also cover statistical analyses and software to interpret and visualize those data. |
Oasis Title: | Exp Design Field Plant Bio |
Prerequisite: | One undergraduate-level Statistics course |
Semester Course Offered: | Offered spring semester every year. |
Grading System: | A-F (Traditional) |
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Course Objectives: | By the end of this course, students will understand how to:
1) design hypothesis-informed studies that directly relate to
planned analyses
2) implement appropriate analytical approaches
3) deal effectively with real-world heterogeneity in field studies
4) manage and visualize data responsibly |
Topical Outline: | 1. Introduction to experimental design and statistical inference
• Review of probability theory, distributions, and descriptive
statistics
• Data visualization: responsible data exploration and examining
distributions
2. Designing successful field studies: philosophies and
relationships to statistical inference
• Experimental vs. observational study design
• Dealing with heterogeneity in the real world: appropriate
controls, replication, and pseudoreplication
• Visualizing experimental designs and hypotheses
• Responsible and effective data management strategies
3. General linear models (2 weeks)
• Regressions, ANOVA, ANCOVA
• Dealing with heterogeneity in the real world: data
transformations
• Correcting for multiple comparisons
• Data visualization: discrete vs. continuous variables
4. Generalized linear models (2 weeks)
• Binomial and Poisson families
• Data visualization: back-transforming from link functions
5. Mixed models: fixed and random effects (2 weeks)
• Dealing with heterogeneity in the real world: blocking,
nesting, stratifying
• Temporal vs. Spatial variation
• Data visualization: how to deal with random effects
6. Multivariate analyses of community data (2 weeks)
• Measuring distances among groups in multivariate space
• Ordination techniques to reduce dimensionality: PCA, PCoA, CA,
NMDS
• Inference tools: PERMANOVA, ANOSIM, PERMDISP
• Data visualization: visualizing multi-dimensional points and
axes
7. Intro to structural equation models
• Pros and cons of SEMs; difference vs. multiple regression
• How to interpret a SEM figure
8. Intro to model selection and multi-model inference
• Statistical philosophies: Information-theoretic approach
• Responsible model selection: a priori hypotheses
9. Intro to Bayesian probability and inference
• Statistical philosophies: Bayes theorem
• Markov Chain Monte Carlo techniques
• How to interpret results from Bayesian analyses |
Honor Code Reference: | UGA Student Honor Code: "I will be academically honest in all of
my academic work and will not tolerate academic dishonesty of
others." A Culture of Honesty, the University's policy and
procedures for handling cases of suspected dishonesty, can be
found at www.uga.edu/ovpi. Every course syllabus should include
the instructor's expectations related to academic integrity. |